PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715440
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 654aa    MW: 74778 Da    PI: 9.9347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715440genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-2195187598
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                l+++ +l+ +rl+lp +fa+++g++k ++k+++l++e+grsW+++l+y+k + +++ + GW++F+ +ng+k g   +Fkl++ +++ +v++++ 
  676715440  95 LVTPLSLQFDRLYLPISFARSNGLDKMSGKEIVLRNEEGRSWNLNLKYNKAGMHTFVRPGWRRFCAENGMKKGHHYIFKLVQ-KSAPPVIRLCG 187
                55666677789*********************************************************************98.88889999986 PP
2B361.91e-19220309697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ++s++lk + l+l k+f++++g+ k +s +++l++e+  +W++ l+y k+ +++++++GWk+F+k ng+k++D++ F+l++ ++ ++v+ ++
  676715440 220 VTSYTLKMDKLYLQKDFVAANGLHKGCS-EVILKNEREVRWTLALRYYKSVDHTYIGRGWKDFCKVNGIKARDSFKFELVK-KGDKPVLLLC 309
                689*********************9998.**************************************************98.6666787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.80E-7137No hitNo description
PROSITE profilePS508639.925140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-10250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-9246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2184185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1985186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.86191189IPR003340B3 DNA binding domain
CDDcd100174.88E-1691186No hitNo description
SMARTSM010192.1E-2692189IPR003340B3 DNA binding domain
PfamPF023623.8E-2094187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-18209310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.296215311IPR003340B3 DNA binding domain
SMARTSM010195.9E-22216312IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-16220310IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-18220309IPR003340B3 DNA binding domain
CDDcd100172.16E-15222310No hitNo description
PfamPF142232.4E-6366506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MKFTDRWKNF AVAHDLRVGD ITVFRHEGEM VFHVTAFGPR LCDILYTSAS SHNISDGSHD  60
QTNDIGTGNS SRERVKKNPR TKEDSSSDHS RFVALVTPLS LQFDRLYLPI SFARSNGLDK  120
MSGKEIVLRN EEGRSWNLNL KYNKAGMHTF VRPGWRRFCA ENGMKKGHHY IFKLVQKSAP  180
PVIRLCGAYS KPPPPPVTSQ HEPKSTPESS LDNSYYVGSV TSYTLKMDKL YLQKDFVAAN  240
GLHKGCSEVI LKNEREVRWT LALRYYKSVD HTYIGRGWKD FCKVNGIKAR DSFKFELVKK  300
GDKPVLLLCP LNRDKKMRIG KRRREFYQNA LRAKQKKGFI NGSLKLPSET EKPVEAEMWR  360
TVNFMIVGWI RTSISPVLRS TVPFNPDAYK MWTELKKRFS VGSAVRVHQL KAELASCRQE  420
GSTVMGYFGK LSQKWEELLS CKPIPTCTCA ASKVYAREYE EEKVHQFLMG LDEVRFRNVC  480
TNIIGLEVLP DLNSVYQRVV REEKRLGGSR LEPKEAPVGF TAKAAPNGDE PTMGGLMAAV  540
ARVRSSVVCG NYGQTGHEKK DCWQIIGFQS CLRRGIRRME EVAEEVEAEE DQAPQEPMLH  600
KHQVLHRLVL KEEQFLFTYV TYIDFIHSEN KISIVSIRNK ISIVSIQPYR ITIT
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84WP31e-106REM17_ARATH; B3 domain-containing protein REM17
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-108B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]