PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715462
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 361aa    MW: 40136.3 Da    PI: 7.3149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715462genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028527123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F++  +L  Hir H
  676715462  5 HVCKFCKKKFPSGKSLGGHIRIH 27
               79*******************99 PP
2zf-C2H213.20.00027309331123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C k+F++   L  H r+H
  676715462 309 HECPICFKVFKSGQALGGHKRSH 331
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.45E-7232No hitNo description
Gene3DG3DSA:3.30.160.607.7E-6230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.8E-6525IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.323532IPR007087Zinc finger, C2H2
SMARTSM003550.024527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS501579.32876104IPR007087Zinc finger, C2H2
SMARTSM00355957696IPR015880Zinc finger, C2H2-like
PfamPF139120.00527795IPR007087Zinc finger, C2H2
SuperFamilySSF576676.78E-5306332No hitNo description
PfamPF139125.2E-12308332IPR007087Zinc finger, C2H2
SMARTSM003550.083309331IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452309332IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEKEHVCKFC KKKFPSGKSL GGHIRIHTSE NSVDSDTCNV KKKKKKKNNI KKLVDQREMI  60
TAPQQQQQEQ RLPRQLRCRE CGKGFDSLNA LGDHRDGQCE GEKFGMDSQS DTETFSGPTK  120
KRSKKVMEQP SPESFSNGNS SSGSEIDQEH KNSALSLMMM SKDPKGRSLV VNSRAESSEN  180
NSEVLENKLS SGEQLKTVDD QLRSAADDDD DDDDDATLGD SYSSDSDYYI NGPKKSDSDI  240
SVDRSLGNTE FGSEVVVKEG GSKYELHKGK RVSPFYESDS CADTNSKFHK SSDRKSPMVK  300
KAAVASKVHE CPICFKVFKS GQALGGHKRS HSIVNQEHRV RHRAADMRID LNLPATDDSD  360
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKK
24251KKKKKNNIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415935.11e-140zinc finger protein ZAT9
TrEMBLV4L3G51e-139V4L3G5_EUTSA; Uncharacterized protein
STRINGXP_006415935.11e-140(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-64C2H2-like zinc finger protein