PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715502
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30540.9 Da    PI: 5.4187
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715502genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-1778131356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  676715502  78 KKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 131
                456899**********************************************99 PP
2HD-ZIP_I/II121.44.7e-3977169193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr+y++lk+ene+L +++++L++++++
    676715502  77 EKKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQYESLKDENETLLTQNHKLQAQVMA 169
                  69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1861135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1767133IPR009057Homeodomain-like
PROSITE profilePS5007117.10373133IPR001356Homeobox domain
SMARTSM003896.6E-1776137IPR001356Homeobox domain
PfamPF000461.1E-1478131IPR001356Homeobox domain
CDDcd000867.24E-1578134No hitNo description
PRINTSPR000314.8E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000314.8E-6113129IPR000047Helix-turn-helix motif
PfamPF021831.5E-15133173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSCNNSLAFF PANFSLQNHH QEEEDHSQSL LPSCTLPQDF HGFIGKRSPM TNNLEGFCNL  60
EMNGEEEFSD DGSKMGEKKR RLNMEQLKTL EKNFELGNKL ESDRKLELAR ALGLQPRQIA  120
IWFQNRRARS KTKQLERDYD ALKRQYESLK DENETLLTQN HKLQAQVMAL KSREPIESIN  180
LNKDTEGSCS NRSENISGDI RPPEIDSQFT GGHPPSSPTT TTMQFFQNSS SEHRMVKEEN  240
SISNMFCGMD DQSGFWPWLD QPHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715502
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415983.11e-179homeobox-leucine zipper protein ATHB-23
SwissprotQ8LFD31e-163ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLV4MRF61e-178V4MRF6_EUTSA; Uncharacterized protein
STRINGXP_006415983.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-159homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]