PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715710
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 433aa    MW: 47821.3 Da    PI: 8.6571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715710genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-06113132626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+f+   G Ck Gd C+F H+
  676715710 113 CKFWKT-GNCKKGDHCPFLHS 132
                9*9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-5105132IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6107133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7107132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389112134IPR000571Zinc finger, CCCH-type
SMARTSM003205.2E-5138177IPR001680WD40 repeat
SuperFamilySSF509781.46E-42139189IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.5E-42140428IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029418.009145349IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984145186IPR001680WD40 repeat
PfamPF117159.4E-6160193No hitNo description
PRINTSPR003203.2E-8164178IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
SMARTSM00320120215254IPR001680WD40 repeat
SuperFamilySSF509781.46E-42224429IPR017986WD40-repeat-containing domain
SMARTSM003200.0034262300IPR001680WD40 repeat
PfamPF004001.3E-4266300IPR001680WD40 repeat
PROSITE profilePS5008210.475284309IPR001680WD40 repeat
PRINTSPR003203.2E-8287301IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780287301IPR019775WD40 repeat, conserved site
SMARTSM003203.4E-5303340IPR001680WD40 repeat
PfamPF004000.002305339IPR001680WD40 repeat
PROSITE profilePS500829.272310339IPR001680WD40 repeat
PRINTSPR003203.2E-8327341IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2390427IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSYKAPRRYS NGRNFGVERQ QNFAADIVTR RPYAPYDSRM NKGPNKWSRN LVWTASDGNR  60
PRKNDNSSGS TKPQVPNQQR NNVVYEPRST SVSDTRVCGW RDKVSPKSKE CVCKFWKTGN  120
CKKGDHCPFL HSWTCLPGMV MVASLEGHKK DLKGIALPQG SDKLFSASSD GTLRIWDCHT  180
GQCVHTINLQ AEAGSLMSEG PWVFLGLPNA VKAFNVQTSK DLHLDGVVGQ LHAMTVGNGM  240
LFAGTSSGTI SVWKFTDNEA DPFTYLKCLE GHHCGEITCF IVGGQRLYSG SVDKTIKVWD  300
LNTLECTMTL RQHTDTVTSL LCWDQYLISS SLDGTIKVWA CSENGSLKVA NTRRQEQTVH  360
TLCGMSDAEG KPIIFCSYQN GTVSICDLPS FEERGKMFST NTIGTITIGP EGLLFSGDKS  420
GKLRVWNLAG TKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1814442810323Tako8
6g6n_A1e-1814442810323Tako8
6g6n_B1e-1814442810323Tako8
6g6n_C1e-1814442810323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485362.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X2
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C0F60.0A0A3P6C0F6_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein