PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716232
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 412aa    MW: 45120.8 Da    PI: 6.5966
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716232genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.8e-15235290358
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                ++kr+rr+ +NRe+ArrsR+RK++++ e  + v +L ae ++L ++l+ ++ ++++
  676716232 235 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLLSRLSDMNHKYDA 290
                68******************************************999988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-16233297IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-10234287No hitNo description
PROSITE profilePS5021710.691235289IPR004827Basic-leucine zipper domain
PfamPF001701.8E-12236289IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.58E-10237287No hitNo description
PROSITE patternPS000360240255IPR004827Basic-leucine zipper domain
PfamPF124981.7E-13304392IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MHIVFSVDDL TESFWPAPPP VPSPGSVSTP AQNMAADGMI RSQSEWAFHR LLREMSGSDE  60
SPTTTTTTTN ATERSPPPVQ SEPSVDETAD VVEIQKPPPP QNHRLPADDQ GNRNRGRSSD  120
PLDSSVVDPN QYHAILKSKL DLACAAVARR VGTVKPEDSS GNQKQSVPVG SQAQGSVVAQ  180
TSPGASSVRS VPSTSIQKKP DVPARQTTSI SSRDDSDDDD LDGDTETADN GDPTDVKRAR  240
RMLSNRESAR RSRRRKQEQM NEFDTQVGQL RAEHSTLLSR LSDMNHKYDA AAVDNRILRA  300
DIETLRTKVK MAEETVKRVT GVNPLHWGRP NMGMPLNNTP RDASRIPPSS NHILKSAIPS  360
TTGAGTDAGL APNQRVERAN FLPEQVNREG MQNQFATSTD LYETLPHWNH KH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249256RRSRRRKQ
2251256SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716232
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403555.10.0basic leucine zipper 25 isoform X1
SwissprotQ9M1G60.0BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A1J3I3580.0A0A1J3I358_NOCCA; Basic leucine zipper 25
STRINGXP_006403555.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.11e-177basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]