PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716548
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 412aa    MW: 46899.3 Da    PI: 8.513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716548genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-11261041396
                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ++  ++p +f+++  g    +  +++  ++++sW++ l +  k g +++++ W eFv++n L  gD+++F +++++ f   +++
  676716548  26 KSTRIIPEEFLRNTHGT--IEHRVVFSVPWNNSWQLWL-HLEKEGLFMIEEDWDEFVDDNLLGPGDILIFIHQDTMYF--ELRI 104
                46679******777544..3346***************.4555567*************************9887888..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.53E-1112106No hitNo description
SuperFamilySSF1019369.42E-1412108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1213109IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-1113108IPR003340B3 DNA binding domain
PROSITE profilePS5086310.99714108IPR003340B3 DNA binding domain
PfamPF023626.3E-925104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-7163251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-10163248IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0025170265IPR003340B3 DNA binding domain
PROSITE profilePS508636.922227263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-8311398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-10311396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-6316400No hitNo description
SMARTSM010190.018318408IPR003340B3 DNA binding domain
PROSITE profilePS508637.161375412IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSRIQEILSK CSFSKSLFPG KNWKSKSTRI IPEEFLRNTH GTIEHRVVFS VPWNNSWQLW  60
LHLEKEGLFM IEEDWDEFVD DNLLGPGDIL IFIHQDTMYF ELRIFKKDGK EILSPPLKVE  120
PETEPHYSHQ ETPTPASASV SGRKTGRGRP SCAHVENPKQ YLFNPKNPYF EKTLTKTNHV  180
LYVSSSVIDQ YGLEFGPRNS SMYFLLPDGK KLEGFTKCYG GGHSFLGWAA VCQNYNLKLG  240
DTVVCEFELS GRVITAVRVH FVNKAEPVHP EPHYSHQETT TPASAFAEFS ASGSRGRQSC  300
AHVKNPKRYL SNPKNPYFEK TLTKTNYILY VSSSVLDQYG MELGPRNSTM YFLLPDGKKL  360
EGFAKYYGGS RGFLGWANVC QNYNLKLGDT VVCEFELSGR VITAVRVHFV NK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716548
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718657.10.0B3 domain-containing protein At5g25470-like
RefseqXP_013749510.10.0B3 domain-containing protein At5g25470-like
SwissprotQ680D92e-98Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A0D3CJ470.0A0A0D3CJ47_BRAOL; Uncharacterized protein
STRINGBo5g121410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-100B3 family protein