PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716702
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 386aa    MW: 44358.1 Da    PI: 9.7982
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716702genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.7e-213276751
               HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               s +  +++kR+++++KKA+ LSvLC++ev+vi+++s+g+l ++++
  676716702 32 SLKAKSLTKRQETVFKKAYQLSVLCGIEVCVIYYGSDGELTTWPK 76
               556679*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41577IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-1633107IPR002100Transcription factor, MADS-box
CDDcd002666.71E-1634101No hitNo description
PROSITE profilePS5006611.8723478IPR002100Transcription factor, MADS-box
PfamPF003193.2E-133774IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-54055IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-55576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASSSSFFPS SSSPTSKKAT KFSQTLFQKP SSLKAKSLTK RQETVFKKAY QLSVLCGIEV  60
CVIYYGSDGE LTTWPKDREK VKDMALRYSQ LSDMKRRKGR TYIEQLLEKI NKDDSKKDKK  120
KKKKKVLKLV SNYKYPDWDH RFDNCSVEQL TELIQSLERR QTIMQHRLRA VVESQRQRNM  180
HYTNMAGQEQ MITTTTPAMN HLQQHSNQFS MVLYNHESGT SQQTPVSTSD FNQSKSLAPL  240
PNSLTMYQNP NMGRYPMLLG TQETGMKEAL SMNMLPYNDS INTNYVNFFP NQFHQNSCKV  300
ENYSGFPGVQ ETGINNMNLK DYGGSLWAQG SEINGLQNMD MYGYKSNNNA NGFSHQFVQF  360
PTQRAAPQAF QYLDQSTQNT IPLYDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123KKDKKKKKK
2118124KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146116.11e-164PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-107AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLM4E0P41e-162M4E0P4_BRARP; Uncharacterized protein
STRINGBra022341.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-101AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]