PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717432
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 337aa    MW: 37542.6 Da    PI: 9.9468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717432genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.3e-32164272196
                EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f+k+ tpsdv+k++rlv+pk++ae+h               ++++++ + led+sg++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++  
  676717432 164 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpttttvtmgmTPSPTKGVLINLEDRSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTG 263
                89***************************99999999885566799**************************************************8766 PP

                SEE..EEEE CS
         B3  88 sefelvvkv 96 
                 +++l++ +
  676717432 264 PDRQLYIDW 272
                777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-47197IPR001471AP2/ERF domain
PROSITE profilePS510328.6637198IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.6E-40159276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-31162266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-29163261No hitNo description
SMARTSM010193.3E-26164276IPR003340B3 DNA binding domain
PROSITE profilePS5086314.099164276IPR003340B3 DNA binding domain
PfamPF023622.0E-29164272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEYSCIDDST SNTSESLSIS TPSANKKLSP PPPLPPPQAM RLYRMGSNGS SVVVDSENGV  60
ETESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLESAF LEAHSKAEIV DMLRKHTYAD  120
ELQQSKRKFL DGDGNAKRCG LGTTKMSDSQ ENDGGVSRAR EVLFEKAVTP SDVGKLNRLV  180
IPKQHAEKHF PLPTTTTVTM GMTPSPTKGV LINLEDRSGK VWRFRYSYWN SSQSYVLTKG  240
WSRFVKEKNL RAGDVVCFER STGPDRQLYI DWKVKSGTEQ ITPVQTVVRL FGVNIFNATT  300
TAKLNDVAGE CVGKKRSREI DLFAFGCSKK QAIINAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5816127911121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717432
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637910.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-179RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0D3CD610.0A0A0D3CD61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7T50.0A0A3P6F7T5_BRAOL; Uncharacterized protein
STRINGBo5g043120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-162RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]