PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717716
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 560aa    MW: 62041.1 Da    PI: 6.4313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717716genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.8e-1877123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
        676717716  77 KGGWTPEEDETLRQAVEKYKGKRWKKIAEFFP-ERTEVQCLHRWQKVL 123
                      688*****************************.************986 PP
2Myb_DNA-binding60.92.7e-19129175148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++vk++G+  W+ Iar ++ gR +kqc++rw+++l
        676717716 129 KGPWTQEEDDKIVELVKKYGPAKWSVIARSLQ-GRIGKQCRERWHNHL 175
                      79******************************.*************97 PP
3Myb_DNA-binding54.33.2e-17181224146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WTteE+  l++a + +G++ W+ Ia+ ++ gRt++ +k++w++
        676717716 181 KDAWTTEEESALINAQRTYGNK-WAEIAKVLP-GRTDNAIKNHWNS 224
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.86172123IPR017930Myb domain
SMARTSM007171.3E-1676125IPR001005SANT/Myb domain
PfamPF002491.1E-1677123IPR001005SANT/Myb domain
SuperFamilySSF466892.08E-1678133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2379135IPR009057Homeodomain-like
CDDcd001674.48E-1580123No hitNo description
PROSITE profilePS5129431.412124179IPR017930Myb domain
SuperFamilySSF466893.37E-31126222IPR009057Homeodomain-like
SMARTSM007173.4E-17128177IPR001005SANT/Myb domain
PfamPF002491.4E-17129175IPR001005SANT/Myb domain
CDDcd001676.06E-15131175No hitNo description
Gene3DG3DSA:1.10.10.605.6E-26136182IPR009057Homeodomain-like
SMARTSM007171.4E-16180228IPR001005SANT/Myb domain
PROSITE profilePS5129421.717180230IPR017930Myb domain
PfamPF002495.7E-15181224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-22183230IPR009057Homeodomain-like
CDDcd001679.69E-13183226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSSGSNPSGC SRDKEEERSE LKIEVLQCME NKQPTPASCS SASEGSGNIF LKSPDIKTPA  60
TASPSHRRTS GPMRRAKGGW TPEEDETLRQ AVEKYKGKRW KKIAEFFPER TEVQCLHRWQ  120
KVLNPELVKG PWTQEEDDKI VELVKKYGPA KWSVIARSLQ GRIGKQCRER WHNHLNPGIR  180
KDAWTTEEES ALINAQRTYG NKWAEIAKVL PGRTDNAIKN HWNSSLKKKL EFYLATGNMP  240
PSATKLGVPD DFADGDRDFK LSSATKPLKD SDSVTQTSSG NTDATEDGSE HINSSSDLLE  300
EVAASQRIGV NEDACSPASV ENKPQLPNLG PKYACSPASV ESKLQLPNLG PTPEKAGINS  360
KSYEENGFGT PAHGNLCYKS PIDFYIPSEA DLQRMYGYEC GCSPGAATPL SLITPPCNKD  420
SGLAATRSPE SFLREAARTF PNTPSIFRKR RRVVLAKKTD DDVVYSVAKE VDQKENIKDS  480
SEMSPVRREG LLLETVDDCG DDEELGSNGN TFNVSPQYRL RAKRTAVFKS RQLEFTSAKE  540
NQPDNETETS EVASEEDKRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70762305159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70762305159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447451RKRRR
2448452KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717716
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287439.10.0transcription factor MYB3R-5
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGBostr.6251s0040.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]