PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717742
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family E2F/DP
Protein Properties Length: 293aa    MW: 33150.7 Da    PI: 8.3332
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717742genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.88.7e-2452134371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  676717742  52 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnsekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 134
                5799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.5E-993291IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.1E-3647138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2850134IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-1853135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023198.4E-2053134IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440745.75E-39141283No hitNo description
CDDcd144583.38E-30141242IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-53141293IPR014889Transcription factor DP, C-terminal
PfamPF087815.1E-33142266IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEMDLFVTPE KQRNHPSVSL GKTPVRRKLI VDDDNEIGGK RSEKKGQSRT AGGGLRQFSV  60
MVCQKLEAKK ITTYKEVADE IISDFATIKQ NSEKPLNDNE YNEKNIRRRV YDALNVFMAL  120
DIIARDKKEI RWKGLPITCK KDVEEVKMDR NKIMNSVQKK AAFLKELREK VSSLENLMSR  180
NQEMVVKTEG PAEGFTLPFI LLETNPHAVV EIEISEDMQL VHLDFNSTPF SVHDDAYILK  240
LMQEHKLQQN RVSSSSSTHH QSQHSSAHSS SSSCIASGTS GPVCWNSGSI DTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2652136990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717742
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2945310.0AJ294531.1 Arabidopsis thaliana mRNA for DP-like protein (dpa gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879310.10.0transcription factor-like protein DPA
RefseqXP_020879311.10.0transcription factor-like protein DPA
SwissprotQ9FNY30.0DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A1J3ENJ00.0A0A1J3ENJ0_NOCCA; Transcription factor-like protein DPA
TrEMBLD7M7T40.0D7M7T4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.30.0Transcription factor DP