PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718120
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 371aa    MW: 40729.2 Da    PI: 8.1533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718120genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043160182123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  676718120 160 YQCKTCDRTFPSFQALGGHRASH 182
                9***********99999998887 PP
2zf-C2H213.10.00029238260123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  676718120 238 HECGICGAEFTSGQALGGHMRRH 260
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-8159182No hitNo description
PfamPF139122.2E-12159184IPR007087Zinc finger, C2H2
SMARTSM003550.028160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471160187IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-8233260No hitNo description
Gene3DG3DSA:3.30.160.606.1E-4236262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11237262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93238262IPR007087Zinc finger, C2H2
SMARTSM003550.047238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PIPFSISPAI VSSPARDIEE ESTDRDSKEN  60
ALGDNVENRK KDGVITSSSS SASWSSNNNP TLKAEEDEEE QEIANCLILL AQGHSLRPHN  120
QQLKIAHHET NNNSTYRFSS RRFLETSSSN GGGKAGYYVY QCKTCDRTFP SFQALGGHRA  180
SHKKPKATSF YSNLDLKKNV YENDAVSLVT TTSIYSNNKN NNNRSLVVYG KAGNNKVHEC  240
GICGAEFTSG QALGGHMRRH RGAVVFAAAP APTVTVATAA ANTELSLSSM SFDQISDGQD  300
HLVMPATKRA KKSVVSLDLD LNLPAPEEEN RVNGFTFALK QKHEQEHQPT KQGEERKSLL  360
MSAPTLVDCH Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398898.10.0zinc finger protein ZAT5
TrEMBLV4N4N10.0V4N4N1_EUTSA; Uncharacterized protein
STRINGXP_006398898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.10.0C2H2 family protein