PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718122
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 572aa    MW: 63697.4 Da    PI: 4.2787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718122genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-5391361128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky++g+++nrat++gyWk+tgkd+e+ + +++
  676718122   9 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYNNGSKTNRATEKGYWKTTGKDREIRN-GSR 106
                579**************************9.99**************95347777888*************************************9.99* PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kktLv+++grap+ge+t+Wvmheyrl
  676718122 107 AVGMKKTLVYHRGRAPRGERTNWVMHEYRL 136
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-617159IPR003441NAC domain
PROSITE profilePS5100558.2349159IPR003441NAC domain
PfamPF023655.7E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL  60
KSRDLEWYFF SMLDKKYNNG SKTNRATEKG YWKTTGKDRE IRNGSRAVGM KKTLVYHRGR  120
APRGERTNWV MHEYRLTDEE LKKAGVPQDA FVLCRIFQKS GTGPKNGEQY GAPYLEEEWE  180
EDQMTFVPEQ DALSDGLPVD DDVYVDIDDI DEKPENLVIY DAIPVQPNYC HGESSNNVES  240
GNYSDSGNYI QPGNYVGDSG GYFDQPIETF EEVQKPIIRD GSIQPCSLFP EEQIGCGEQD  300
ENAVNLETSN NDVFVADTCY SDIPIEANYL PDEPFIDSSN NLPLSDDLYL ETNDLNSALP  360
ADFNYEDYLN FFDDEDAQNL TLDVSQLLGS EDALPDQEGL DQKPSTEELE KEVAQGKEAV  420
EKKESGEGSS SKQDADVTDF DPASKYPFLK KASHMFGAIS APPSFASQFQ SKDAAIRLHA  480
AQSSGSVHVT AGMIRISNMT LAADSGMGWS YDKNGNLNVV LSFGLVQRDD AMSSSGSKTG  540
GTTATRAVLV FMCLWVLLLS VSFKIGTMVS AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-45816519174NAC domain-containing protein 19
3swm_B3e-45816519174NAC domain-containing protein 19
3swm_C3e-45816519174NAC domain-containing protein 19
3swm_D3e-45816519174NAC domain-containing protein 19
3swp_A3e-45816519174NAC domain-containing protein 19
3swp_B3e-45816519174NAC domain-containing protein 19
3swp_C3e-45816519174NAC domain-containing protein 19
3swp_D3e-45816519174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718122
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530790.0AK353079.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-K06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398899.10.0NAC domain-containing protein 78
SwissprotQ84K000.0NAC78_ARATH; NAC domain-containing protein 78
TrEMBLV4LD690.0V4LD69_EUTSA; Uncharacterized protein
STRINGXP_006398899.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]