PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718238
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 225aa    MW: 25549.5 Da    PI: 5.4639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718238genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-102773346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a + l  +    +W++Ia+ ++ g+t  +++ r+  
        676718238 27 TWTAEENKRFEKALAFLDDNdnleSWSKIAALIP-GKTVDDVIKRYKE 73
                     5*****************99**************.**********975 PP
2Myb_DNA-binding50.35.6e-16151195347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
        676718238 151 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 195
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-61773IPR009057Homeodomain-like
PROSITE profilePS512937.5332377IPR017884SANT domain
SMARTSM007178.6E-72477IPR001005SANT/Myb domain
CDDcd001677.31E-82774No hitNo description
PfamPF002494.6E-82773IPR001005SANT/Myb domain
SuperFamilySSF466893.3E-92778IPR009057Homeodomain-like
PROSITE profilePS5129422.32144200IPR017930Myb domain
SuperFamilySSF466891.17E-17146199IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18147199IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-13148195IPR009057Homeodomain-like
SMARTSM007171.9E-13148198IPR001005SANT/Myb domain
CDDcd001673.85E-11151196No hitNo description
PfamPF002494.0E-13151195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSTNGGFEF FSPENTNWTF QEVKEATWTA EENKRFEKAL AFLDDNDNLE SWSKIAALIP  60
GKTVDDVIKR YKELEDDVSD IEAGLVPIPG YGCNASSETT GGDCFFGLEN SAGCGYVYGY  120
DYVVGGKRSS PATTDGFRLP MPEKERKKGV PWTEEEHRRF LMGLKKYGKG DWRNIARNFV  180
TTRTPTQVAS HAQKYFIRQL TDCKDKRRFA FEPAASYYNA FPQWS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195301e-78AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398645.11e-132transcription factor DIVARICATA
SwissprotQ8S9H71e-66DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX81e-130V4LJX8_EUTSA; Uncharacterized protein
STRINGXP_006398645.11e-131(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-111MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]