PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718360
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 410aa    MW: 44872.2 Da    PI: 7.5826
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718360genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.9e-13195241151
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  676718360 195 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAI 241
                89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.23171160IPR001471AP2/ERF domain
SMARTSM003802.3E-12120166IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-6121160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-8131160IPR001471AP2/ERF domain
PfamPF008473.8E-8195241IPR001471AP2/ERF domain
CDDcd000181.72E-23195255No hitNo description
SuperFamilySSF541713.79E-16195254IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-15196254IPR001471AP2/ERF domain
PROSITE profilePS5103215.211196253IPR001471AP2/ERF domain
SMARTSM003802.9E-29196259IPR001471AP2/ERF domain
PRINTSPR003671.0E-5197208IPR001471AP2/ERF domain
PRINTSPR003671.0E-5235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY ADRKTSDGGS GNRLEESGTS TSSVINADVA DEDSCSTRAF  60
TLNFDILKVG SSGGSSTRSW IDLSFDSHGE TKFVAPAPAP APVPAQVKKS RRGPRSRSSQ  120
YRGVTFYRRT GGFDTAHAAA RAYDRAAIKF RGVDADINFT LGDYEEDMKQ VQNLSKEEFV  180
HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA  240
ISSNGREAVT NFELSSYQNE FNSDTNNEGG HDKLDLNLGI SLSPGNASKQ NGRLFQRGVN  300
LTIDNELMGK PVNTPLPYGS SDHRAYWNGA CPSYNNPVEG RATEKRSEAE GGMMSNWGWQ  360
RPGQTSAMRP QPPGAQPQLF SVAAASSGFS NFRQQPPNDN ASLGYFYPQP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031001e-105AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds.
GenBankAF3250741e-105AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0508151e-105AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0914181e-105AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631232.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3P6C1H10.0A0A3P6C1H1_BRAOL; Uncharacterized protein
STRINGBo4g070350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7