PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 422aa    MW: 46625.6 Da    PI: 4.9625
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718906genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.13.3e-311242462123
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +e L++++++++s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++      +  + + ts+++ +e++ a k fs +sPi+ fsh+taNq
  676718906 124 IEDLIRVVDCIDSEELQLAQVVLSRLNQRlRSPNGRPLQRAAFYFKEALGSLLTG----SNRNNQNRLTSWTEIVERIRAIKEFSGISPIPLFSHFTANQ 219
                689*************************99*************************....344456667777779************************** PP

       GRAS 101 aIleavege....ervHiiDfdisqGl 123
                aIl+ ++++       H++Dfdi+ G+
  676718906 220 AILDTLQQQqsssPFAHVVDFDIGFGA 246
                *******995544456********995 PP

2GRAS131.11.2e-40247421194374
       GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh..nsesFlerflealeyysalfdsleaklpreseerikvErel 289
                +r+ +gE+++V l+  ++r l       + ++ +++ ++++sPkvvv+v++e       +++sF ++f++ le+y+++++sl+a +p+ +  ++ +E ++
  676718906 247 IRFVEGEKTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwN-GfsGAGSFQREFVSGLEFYTTVLESLDAAAPTGDLGKKIIETFV 338
                788999*********999999.......33567*******************642.235889************************************** PP

       GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                l+++i  +v ++ ++r    e  ++Wre++ +aG++p+pls+++  qa++l++kv+++g++v + +g+lvl+W+ rpLv++SaWr
  676718906 339 LRPKIAAAVEAAASKRLTGGE--MTWREAFCAAGMRPIPLSQFVDFQAECLVEKVQVRGFHVAKPQGELVLCWHARPLVATSAWR 421
                *************99776666..9************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.65397422IPR005202Transcription factor GRAS
PfamPF035141.1E-28124246IPR005202Transcription factor GRAS
PfamPF035144.2E-38247421IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRVPPSSDSN SGGRSPSTVE EKPVILTTTG GDNSPPPQLP LDDHAMRSMD WDSIMRELEL  60
DDDSTPNLNK SNFPPSPIYV DPQLPGFPDQ LHPPEFRSSS GDVYNFDNNN NNEGSVNNGG  120
FDIIEDLIRV VDCIDSEELQ LAQVVLSRLN QRLRSPNGRP LQRAAFYFKE ALGSLLTGSN  180
RNNQNRLTSW TEIVERIRAI KEFSGISPIP LFSHFTANQA ILDTLQQQQS SSPFAHVVDF  240
DIGFGAIRFV EGEKTVVLLS PVIFRRLNGI SGFVNDLRRV SPKVVVFVDS EGWNGFSGAG  300
SFQREFVSGL EFYTTVLESL DAAAPTGDLG KKIIETFVLR PKIAAAVEAA ASKRLTGGEM  360
TWREAFCAAG MRPIPLSQFV DFQAECLVEK VQVRGFHVAK PQGELVLCWH ARPLVATSAW  420
RF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297491.11e-167scarecrow-like protein 15
SwissprotO232105e-97SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3DDU30.0A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGXP_006297491.11e-166(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-94GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]