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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 676718906 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 422aa MW: 46625.6 Da PI: 4.9625 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 100.1 | 3.3e-31 | 124 | 246 | 2 | 123 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+e L++++++++s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++ + + + ts+++ +e++ a k fs +sPi+ fsh+taNq
676718906 124 IEDLIRVVDCIDSEELQLAQVVLSRLNQRlRSPNGRPLQRAAFYFKEALGSLLTG----SNRNNQNRLTSWTEIVERIRAIKEFSGISPIPLFSHFTANQ 219
689*************************99*************************....344456667777779************************** PP
GRAS 101 aIleavege....ervHiiDfdisqGl 123
aIl+ ++++ H++Dfdi+ G+
676718906 220 AILDTLQQQqsssPFAHVVDFDIGFGA 246
*******995544456********995 PP
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| 2 | GRAS | 131.1 | 1.2e-40 | 247 | 421 | 194 | 374 |
GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh..nsesFlerflealeyysalfdsleaklpreseerikvErel 289
+r+ +gE+++V l+ ++r l + ++ +++ ++++sPkvvv+v++e +++sF ++f++ le+y+++++sl+a +p+ + ++ +E ++
676718906 247 IRFVEGEKTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwN-GfsGAGSFQREFVSGLEFYTTVLESLDAAAPTGDLGKKIIETFV 338
788999*********999999.......33567*******************642.235889************************************** PP
GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
l+++i +v ++ ++r e ++Wre++ +aG++p+pls+++ qa++l++kv+++g++v + +g+lvl+W+ rpLv++SaWr
676718906 339 LRPKIAAAVEAAASKRLTGGE--MTWREAFCAAGMRPIPLSQFVDFQAECLVEKVQVRGFHVAKPQGELVLCWHARPLVATSAWR 421
*************99776666..9************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 16.653 | 97 | 422 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.1E-28 | 124 | 246 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 4.2E-38 | 247 | 421 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 422 aa Download sequence Send to blast |
MRVPPSSDSN SGGRSPSTVE EKPVILTTTG GDNSPPPQLP LDDHAMRSMD WDSIMRELEL 60 DDDSTPNLNK SNFPPSPIYV DPQLPGFPDQ LHPPEFRSSS GDVYNFDNNN NNEGSVNNGG 120 FDIIEDLIRV VDCIDSEELQ LAQVVLSRLN QRLRSPNGRP LQRAAFYFKE ALGSLLTGSN 180 RNNQNRLTSW TEIVERIRAI KEFSGISPIP LFSHFTANQA ILDTLQQQQS SSPFAHVVDF 240 DIGFGAIRFV EGEKTVVLLS PVIFRRLNGI SGFVNDLRRV SPKVVVFVDS EGWNGFSGAG 300 SFQREFVSGL EFYTTVLESL DAAAPTGDLG KKIIETFVLR PKIAAAVEAA ASKRLTGGEM 360 TWREAFCAAG MRPIPLSQFV DFQAECLVEK VQVRGFHVAK PQGELVLCWH ARPLVATSAW 420 RF |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 676718906 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006297491.1 | 1e-167 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 5e-97 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A1J3DDU3 | 0.0 | A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment) | ||||
| STRING | XP_006297491.1 | 1e-166 | (Capsella rubella) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 2e-94 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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