PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718922
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 315aa    MW: 36446.8 Da    PI: 10.0503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718922genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05248270123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+Cp+C+ +F ++  +  H+ +H
  676718922 248 YTCPKCNGMFDTSQKFAAHMTSH 270
                9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.286248275IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSSIPNRSNS YCHGTTNRNG FVSNLSNHNS KVIRTTTFPD HMNHESIFTS SPSLPLYQNS  60
YVSSSSFNLK NLHTTYHMKR DIDSVLGADR FPIQNNPHFS RVSFTQTITK RFSAIVPTNQ  120
ILNIQNDLKR EQFPMNVKPN VWSRPPFHSP TFFDKNSEIL NPKPLNVIPP HPYSSNFQHL  180
DMLPSLSKDN HDLRVPQEGP LSRESPEPNK SPPKTAADFY DFDQEERSED VRYDGRTHSL  240
PYEKYGPYTC PKCNGMFDTS QKFAAHMTSH YKSETNKDKD KRHRARNKNK YRKLNNKIHG  300
GSKKIKLEPV EYVMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102241.21e-131PREDICTED: uncharacterized protein LOC103828387
TrEMBLA0A3P6EC891e-129A0A3P6EC89_BRAOL; Uncharacterized protein
STRINGXP_006409144.11e-109(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.14e-80C2H2-like zinc finger protein