PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676719304
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 226aa    MW: 25324.1 Da    PI: 10.3675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676719304genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08134174954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  676719304 134 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 174
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-14126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14129184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6135174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-6148179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDNSDILMNM MMLQMEKFPD HFSNPNPSSH NIMMPSEPNT QPFFFNHNQT HLPLVDPTIT  60
HHHRPGLNFR YAPSTSSFLP DKRGGGGDNA NMAAMREMIF RIAVMQPIHI DPESVKPPKR  120
KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS  180
LEEHAVVNGG GMTSAPPVVG GGYGGKGCGT MRSDHHQMLG NAQILR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676719304
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1756791e-171AK175679.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-18-N14.
GenBankAK1759121e-171AK175912.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-57-C09.
GenBankAL1329761e-171AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBankBT0106071e-171BT010607.1 Arabidopsis thaliana At3g50330 gene, complete cds.
GenBankCP0026861e-171CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438373.11e-133PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-107HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A078FTA11e-127A0A078FTA1_BRANA; BnaC08g21730D protein
TrEMBLA0A0D3DRW31e-127A0A0D3DRW3_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RDA51e-127A0A3N6RDA5_BRACR; Uncharacterized protein
TrEMBLA0A3P6FGF01e-127A0A3P6FGF0_BRAOL; Uncharacterized protein
STRINGBo8g079710.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]