PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720428
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 309aa    MW: 35256.3 Da    PI: 10.1005
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720428genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.65.6e-3173172297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifelskkiW 96 
                lfqrl+se De++lLqG+idf+++ g +p++++dafy f+k++i f ++k+qlv+K+r++K+Kf + vkk     +  +ke++fsk+ +qk+fels+kiW
  676720428  73 LFQRLFSEADELALLQGIIDFNSTSG-DPFKHTDAFYGFAKQRICFAATKTQLVNKVRKMKQKFLDTVKKsldkgKGGEKEIVFSKDFEQKAFELSRKIW 171
                79*******************99999.*****************************************9988775556789******************* PP

     DUF573  97 g 97 
                g
  676720428 172 G 172
                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-2574172IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMKRLKTDQE VKSLGTVNET QKKKKRLRRE TTEEDMSGDN EEVKKKRKRR KTKTTEEDVK  60
IIPEAEASKQ KSLFQRLFSE ADELALLQGI IDFNSTSGDP FKHTDAFYGF AKQRICFAAT  120
KTQLVNKVRK MKQKFLDTVK KSLDKGKGGE KEIVFSKDFE QKAFELSRKI WGIEGVLPSK  180
PRSPKDEPDI PEKNVASSPL SSGEEIVALF KEFNLLRFAL DESSLLRRWS MVPGPRKRAL  240
EAKLKMQADK KVEVCLERID LLAYAADVIL RGDNASSSGH GRKNRQVSFV GVEEEKDVSA  300
EQHESNERD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449KKRKRR
24450KKRKRRK
34550KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4LAI63e-64V4LAI6_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405987.14e-65(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2524624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.14e-48DNA-binding storekeeper protein-related transcriptional regulator