PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720596
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18640.6 Da    PI: 9.2543
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720596genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.32.5e-101149341
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
               i n++ r+ t   R+ g++KK  E+ +LC+++++ +i+ 
  676720596 11 IANDTVRKETIKHRKRGLMKKLDEIKILCNVDACAVIYV 49
               89********************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.66E-13164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.881148IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-8160IPR002100Transcription factor, MADS-box
PfamPF003192.9E-101150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MARKTLNLAY IANDTVRKET IKHRKRGLMK KLDEIKILCN VDACAVIYVP FNSNSHSEHR  60
KVEKQNTKLI EDNKERSMRE LIFTFLGGNP GTLTLFHLKN VTLNNPHFEI CESSSMAIAA  120
DMAPTAKAEA SSVTLWNASI FNSLQVTKEL QSVILHTMDQ NILIL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180438.28e-39AGAMOUS-like 46
TrEMBLQ7XJ972e-37Q7XJ97_ARATH; Uncharacterized protein
TrEMBLQ9SI982e-38Q9SI98_ARATH; Putative MADS-box protein
STRINGAT2G28700.13e-38(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-42AGAMOUS-like 46