PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720768
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 349aa    MW: 39150.2 Da    PI: 8.7369
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720768genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17243277135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++
  676720768 243 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 277
                999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5135213.12451184IPR013766Thioredoxin domain
SuperFamilySSF528336.69E-2476181IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.40.30.104.0E-2377181IPR012336Thioredoxin-like fold
PfamPF000856.7E-1978162IPR013766Thioredoxin domain
CDDcd029471.57E-2283180No hitNo description
SMARTSM004014.9E-13237288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387237273IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12239277No hitNo description
Gene3DG3DSA:3.30.50.103.1E-14241277IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.02E-13242292No hitNo description
PfamPF003201.2E-15243277IPR000679Zinc finger, GATA-type
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009657Biological Processplastid organization
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0045454Biological Processcell redox homeostasis
GO:0009295Cellular Componentnucleoid
GO:0009507Cellular Componentchloroplast
GO:0009579Cellular Componentthylakoid
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0047134Molecular Functionprotein-disulfide reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MALVQSRTLP HLNVPFSPIL STLQAPSSLF IRREIRPVTS PFSSSTTGNL PLSPLTHPRK  60
LLCPPPRGKF VREDYLVRKL SAQELQELVK GERKVPLIVD FYATWCGPCI LMAQELEMLA  120
VEYESNAMIV KVDTDDEYEF ARDMQVRGLP TLFFISPDPS KDAIRTEGLI PLQMMRDIID  180
NDIRCEPVIW SDLSCVRCIY LNNGFLTRIF ESEAMESKFT SEDEISCSNG GGEGMVSNEK  240
KSCAICGTSK TPLWRGGPAG PKSLCNACGI RNRKKRRTVI GGNRSEDKKK NHTRNPKLGD  300
SLKQRLMELG RQVMLQRSTA DNQRRKKLGE DEQAAVLLMA LSYASSVYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hyp_A9e-159615553112Thioredoxin
3hyp_B9e-159615553112Thioredoxin
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThiol-disulfide oxidoreductase that plays a role in proper chloroplast development, most likely through regulating plastid-encoded polymerase (PEP) dependent chloroplast transcription. Acts as a component of the transcriptionally active plastid chromosome that is required for plastid gene expression. May be involved in cell death and defense responses (By similarity). {ECO:0000250|UniProtKB:Q9LKW0, ECO:0000269|PubMed:16326926, ECO:0000269|PubMed:20133584, ECO:0000269|PubMed:20511297, ECO:0000269|PubMed:21949211}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720768
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0849590.0AY084959.1 Arabidopsis thaliana clone 12284 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486365.11e-124PREDICTED: thioredoxin-like protein CITRX, chloroplastic
SwissprotQ9M7X91e-121CITRX_ARATH; Thioredoxin-like protein CITRX, chloroplastic
TrEMBLA0A3P6EQG41e-124A0A3P6EQG4_BRAOL; Uncharacterized protein
STRINGBo5g143190.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1025322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-72GATA transcription factor 15
Publications ? help Back to Top
  1. Rivas S, et al.
    CITRX thioredoxin interacts with the tomato Cf-9 resistance protein and negatively regulates defence.
    EMBO J., 2004. 23(10): p. 2156-65
    [PMID:15131698]
  2. Giacomelli L,Rudella A,van Wijk KJ
    High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study.
    Plant Physiol., 2006. 141(2): p. 685-701
    [PMID:16648217]
  3. Meyer Y, et al.
    Evolution of redoxin genes in the green lineage.
    Photosyn. Res., 2006. 89(2-3): p. 179-92
    [PMID:17031546]
  4. Chibani K,Wingsle G,Jacquot JP,Gelhaye E,Rouhier N
    Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa.
    Mol Plant, 2009. 2(2): p. 308-22
    [PMID:19825616]
  5. Meng L,Wong JH,Feldman LJ,Lemaux PG,Buchanan BB
    A membrane-associated thioredoxin required for plant growth moves from cell to cell, suggestive of a role in intercellular communication.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(8): p. 3900-5
    [PMID:20133584]
  6. Arsova B, et al.
    Plastidial thioredoxin z interacts with two fructokinase-like proteins in a thiol-dependent manner: evidence for an essential role in chloroplast development in Arabidopsis and Nicotiana benthamiana.
    Plant Cell, 2010. 22(5): p. 1498-515
    [PMID:20511297]
  7. Hofmann NR
    A new thioredoxin is involved in plastid gene expression.
    Plant Cell, 2010. 22(5): p. 1423
    [PMID:20511298]
  8. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  9. Steiner S,Schröter Y,Pfalz J,Pfannschmidt T
    Identification of essential subunits in the plastid-encoded RNA polymerase complex reveals building blocks for proper plastid development.
    Plant Physiol., 2011. 157(3): p. 1043-55
    [PMID:21949211]
  10. Bohrer AS, et al.
    New insights into the reduction systems of plastidial thioredoxins point out the unique properties of thioredoxin z from Arabidopsis.
    J. Exp. Bot., 2012. 63(18): p. 6315-23
    [PMID:23096001]
  11. Yua QB, et al.
    AtECB1/MRL7, a thioredoxin-like fold protein with disulfide reductase activity, regulates chloroplast gene expression and chloroplast biogenesis in Arabidopsis thaliana.
    Mol Plant, 2014. 7(1): p. 206-17
    [PMID:23956074]
  12. Huang C, et al.
    The reduced plastid-encoded polymerase-dependent plastid gene expression leads to the delayed greening of the Arabidopsis fln2 mutant.
    PLoS ONE, 2013. 8(9): p. e73092
    [PMID:24019900]
  13. Wimmelbacher M,Börnke F
    Redox activity of thioredoxin z and fructokinase-like protein 1 is dispensable for autotrophic growth of Arabidopsis thaliana.
    J. Exp. Bot., 2014. 65(9): p. 2405-13
    [PMID:24659486]
  14. Díaz MG, et al.
    Redox regulation of PEP activity during seedling establishment in Arabidopsis thaliana.
    Nat Commun, 2018. 9(1): p. 50
    [PMID:29298981]