PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720780

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 20252.1 Da PI: 10.1039

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720780	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3.2e-20	10	57	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++e+k +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y + 676720780 10 KVEDKNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 57 6899*************************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.707	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-33	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-26	1	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MGRRKIKMEK VEDKNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYSFGKP 60 SFDLIAGRYT KESEESDSSE TSGHSRGNKT RQEKRVCKRL NSIMEKVEAE KKRGEKFQNW 120 LETAGEEKFD RPIEELSLEE LKEYETKMMT VQSNITHMQA SSLLMNLYNK NKKRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_R	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
1tqe_S	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6byy_A	6e-18	1	78	1	78	MEF2 CHIMERA
6byy_B	6e-18	1	78	1	78	MEF2 CHIMERA
6byy_C	6e-18	1	78	1	78	MEF2 CHIMERA
6byy_D	6e-18	1	78	1	78	MEF2 CHIMERA
6bz1_A	6e-18	1	78	1	78	MEF2 CHIMERA
6bz1_B	6e-18	1	78	1	78	MEF2 CHIMERA
6bz1_C	6e-18	1	78	1	78	MEF2 CHIMERA
6bz1_D	6e-18	1	78	1	78	MEF2 CHIMERA
6c9l_A	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_B	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_C	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_D	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_E	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
6c9l_F	5e-18	1	78	1	78	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407920.1	2e-89	agamous-like MADS-box protein AGL29
Swissprot	O64703	1e-61	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	V4MA98	4e-88	V4MA98_EUTSA; Uncharacterized protein
STRING	XP_006407920.1	7e-89	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G66656.1	6e-72	AGAMOUS-like 91

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]