PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720874
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 334aa    MW: 38578 Da    PI: 7.3102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720874genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-16110155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
        676720874 110 RGHWRPAEDSKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 155
                      899*****************************.***********996 PP
2Myb_DNA-binding59.29.3e-19162205146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T eE+e+l++a++++G++ W+ Iar ++ gRt++++k++w+ 
        676720874 162 RRAFTDEEEERLLQAHNLYGNK-WAMIARLFP-GRTDNSVKNHWHV 205
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.606105156IPR017930Myb domain
SuperFamilySSF466897.86E-29108203IPR009057Homeodomain-like
SMARTSM007176.4E-14109158IPR001005SANT/Myb domain
PfamPF002496.5E-16110155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-26111163IPR009057Homeodomain-like
CDDcd001673.09E-12113154No hitNo description
PROSITE profilePS5129426.193157211IPR017930Myb domain
SMARTSM007171.1E-15161209IPR001005SANT/Myb domain
PfamPF002492.1E-15162204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-21164210IPR009057Homeodomain-like
CDDcd001677.61E-12164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEIGNTDVSS PSITPRFPSS SSSSPHPLTN NNNNNIVMSE DHHRWMEQIA SWEYFSLNIS  60
NDQHKGHYYY ASHGEEEIEN PSQSNFSNSS KKETRDCGSC RHSLKASVSR GHWRPAEDSK  120
LKELVAVYGP QNWNLIAEKL QGRSGKSCRL RWFNQLDPRI NRRAFTDEEE ERLLQAHNLY  180
GNKWAMIARL FPGRTDNSVK NHWHVIMARK FREQSSVYRR RKTMIPHEPL VKPHPHSCND  240
FDTTRSDLIH LVSNDQNHLM LPIPCFSGYD HGNESQLMVG MFENQMMVDD YSARTQEAAT  300
TFVLSNETGK CEMLDESMNK KKPHYFDFLG LGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-311102107107B-MYB
1h88_C4e-319921143159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-319921143159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720874
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652333.20.0transcription factor MYB105-like
SwissprotQ9SEZ41e-158MY105_ARATH; Transcription factor MYB105
TrEMBLM4CJL00.0M4CJL0_BRARP; Uncharacterized protein
STRINGBra004394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-155myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]