PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721024

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 267aa MW: 29259.5 Da PI: 5.0269

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721024	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.1	2.2e-09	93	137	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r NReA r++R++Kka+ + Le++v L a N++L k+l++ 676721024 93 DKRPLGNREAVRKYREKKKAKAASLEDEVSRLRALNQQLVKRLQS 137 578888**********************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-10	87	154	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.806	89	155	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.0E-13	90	155	No hit	No description
Pfam	PF07716	4.4E-15	91	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-6	92	137	No hit	No description
CDD	cd14686	3.85E-13	94	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEDGELEFSN QEVFSSSDMG GLPPSNCSID SFFDGLLMES NAACTHTHTC NPTGPENTHT 60 HTCFHVHTKI LPEDSDEKVS TDDTAESCGK KGDKRPLGNR EAVRKYREKK KAKAASLEDE 120 VSRLRALNQQ LVKRLQSQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PVAPNIPSFS 180 HMMNPCNVQC DDEVYCLQDG FGGNQSQEGV SINDQGLSAC DFDQLQCMPN QNLAGNGNAS 240 FNSANVGIVH RKQLEASSSL YHLFTPG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721024

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022023	0.0	AL022023.1 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
GenBank	AL035522	0.0	AL035522.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII project).
GenBank	AL161586	0.0	AL161586.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82.
GenBank	AY072386	0.0	AY072386.1 Arabidopsis thaliana putative protein (At4g35040) mRNA, complete cds.
GenBank	AY086153	0.0	AY086153.1 Arabidopsis thaliana clone 21838 mRNA, complete sequence.
GenBank	BT000160	0.0	BT000160.1 Arabidopsis thaliana putative protein (At4g35040) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005704.1	1e-164	basic leucine zipper 19
Swissprot	Q8VY76	1e-157	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	V4MLL2	1e-163	V4MLL2_EUTSA; Uncharacterized protein
STRING	Bostr.7867s1363.1.p	1e-167	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-151	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]