PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721034
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 248aa    MW: 27501.8 Da    PI: 7.0525
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721034genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18176210135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  676721034 176 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 210
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-861247IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.19E-13170232No hitNo description
PROSITE profilePS5011411.583170206IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-13170224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-14174208IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
CDDcd002021.54E-14176232No hitNo description
PfamPF003201.6E-16176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MECVEAFLGD FSVDDLLDFS NFDAFVREKS SLSPREEDQQ EREKANSSSD HQITLLSPLE  60
DLLSFPSSNS KLDVPVGDLE DLEWLSSFVE DSFSESCLSG DFPVNPGASV EVQRHCVPVK  120
PRSKRRRTNG HLWSLGSPYS SLYTMVSAVN KKRGKQKAET SSSSSAGAQQ QPRRCCSHCG  180
VQKTPQWRMG PLGAKTLCNA CGVRFKSGRL LPEYRPACSP TFSTEIHSNS HRKVLELRLI  240
KTADPGQD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893734e-85AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468185.11e-140PREDICTED: GATA transcription factor 7
SwissprotO655151e-122GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A3P6FLI41e-137A0A3P6FLI4_BRAOL; Uncharacterized protein
STRINGBo1g005750.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-123GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]