PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721084
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 79aa    MW: 9123 Da    PI: 8.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721084genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++ +++ ++ 
        676721084 11 SWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSADEVRRHYE 55
                     6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.804762IPR017884SANT domain
SMARTSM007171.0E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-51164IPR009057Homeodomain-like
PfamPF002491.8E-71155IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-131165IPR009057Homeodomain-like
CDDcd001674.40E-71258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSMSSNA SWTRKENKLF ERALAIYDQD TPDRWHNVAR AVGGKSADEV RRHYELLIRD  60
VNDIESGRYP HPTYRSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29178177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-103AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143738.12e-51PREDICTED: protein RADIALIS-like 3
RefseqXP_013740043.12e-51protein RADIALIS-like 3
SwissprotQ6NNN04e-44RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A078JFW44e-50A0A078JFW4_BRANA; BnaA01g34510D protein
TrEMBLA0A398APM94e-50A0A398APM9_BRACM; Uncharacterized protein
TrEMBLM4D5D44e-50M4D5D4_BRARP; Uncharacterized protein
STRINGBra011691.1-P7e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-32RAD-like 1