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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 676721116 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 491aa MW: 54744.9 Da PI: 4.791 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 327.3 | 2.9e-100 | 127 | 490 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++s + + ts+++ ++++ a k fs +sPi+ fsh+taNq
676721116 127 IEDLIRVVDCVESDELHLAQVILSRLNQRlRSPSGKPLQRAAFYFKEALDSLLTGSNRNP----NRLLTSWSEIVQKIRAIKEFSGISPIPLFSHFTANQ 222
5789************************99*************************33333....4444555569************************** PP
GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
aIl++++++ vH++Df+i+ G+Q+++L++++a+++ + lR+T+v+++e + e++ ++e+L++fA+e++++f++++++ k++e+l+++++r+
676721116 223 AILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVSGGFLRVTAVVPEE--CAVETRLVKENLTQFASEMKIRFQIEFVLIKTFEMLSFKAIRFV 320
******99977789**************************************66..9******************************************* PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
gE ++V ++ +++r l + ++++++ ++s+sPkvvv+v++e ++ + +sF ++f++ le+y+++++sl+a +p+ + ++ vE ++l+++i
676721116 321 DGERTIVLISPAIFRRL-------NGISDFVNSLRSVSPKVVVFVDSEgwTEVvGPGSFRREFVSGLEFYTMVLESLDAAAPPGDLVKKIVETFVLRQKI 413
****************9.......34567*******************665667899******************************************* PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ +v ++ ++ r+ ++Wre++ +aG++p++ls++a qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
676721116 414 SAAVEMAADR---RNAGEMTWREAFCAAGMRPIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 490
*******999...889999************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.121 | 100 | 470 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.0E-97 | 127 | 490 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0030154 | Biological Process | cell differentiation | ||||
| GO:0048831 | Biological Process | regulation of shoot system development | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 491 aa Download sequence Send to blast |
MKIQPSSPQD NQPSNTTNTN STDSNNNNKN QLSSMDEHVM RSMDWDSIMK ELELDDDSTP 60 NPLKTEFTPT ESAIGPLYAV DSNLPGFPDQ IQPSDFDSSD VYPAQNQTTG YGFNSLDTVD 120 NGGFDTIEDL IRVVDCVESD ELHLAQVILS RLNQRLRSPS GKPLQRAAFY FKEALDSLLT 180 GSNRNPNRLL TSWSEIVQKI RAIKEFSGIS PIPLFSHFTA NQAILDSLSS QSSSPFVHVV 240 DFEIGFGGQY ASLMREIAEK SVSGGFLRVT AVVPEECAVE TRLVKENLTQ FASEMKIRFQ 300 IEFVLIKTFE MLSFKAIRFV DGERTIVLIS PAIFRRLNGI SDFVNSLRSV SPKVVVFVDS 360 EGWTEVVGPG SFRREFVSGL EFYTMVLESL DAAAPPGDLV KKIVETFVLR QKISAAVEMA 420 ADRRNAGEMT WREAFCAAGM RPIQLSQFAD FQAECLLEKA QVRGFHVAKR QGELVLCWHG 480 RALVATSAWR F |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 6e-26 | 120 | 489 | 13 | 378 | Protein SCARECROW |
| 5b3h_A | 6e-26 | 120 | 489 | 12 | 377 | Protein SCARECROW |
| 5b3h_D | 6e-26 | 120 | 489 | 12 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 676721116 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018470388.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Refseq | XP_018471096.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 0.0 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A1J3D5R3 | 0.0 | A0A1J3D5R3_NOCCA; Scarecrow-like protein 15 (Fragment) | ||||
| STRING | XP_006411970.1 | 0.0 | (Eutrema salsugineum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 0.0 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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