PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721148

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TALE

Protein Properties

Length: 723aa MW: 79523.7 Da PI: 7.0449

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721148	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	501	538	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + 676721148 501 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 538 664559******************************88 PP
2	BELL	120.1	9.7e-39	360	431	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkd +a q+ 676721148 360 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDSVAAQL 431 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.2E-76	287	429	IPR006563	POX domain
Pfam	PF07526	4.0E-50	292	427	IPR006563	POX domain
PROSITE profile	PS50071	12.568	479	542	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	482	546	IPR001356	Homeobox domain
CDD	cd00086	1.82E-12	482	543	No hit	No description
SuperFamily	SSF46689	3.25E-17	484	549	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-29	485	548	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	499	538	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MGIAKTSPTT TILSKTLCNN PMSQDYNHHQ HQGGIFSFSN GFDRSDSPSL SQEKREHQRV 60 EMAEESSVAG SGIPVYETAG MLSEMFNFSR SSGGGGALDH SQSFRSNRQL LEQQHQNIPA 120 MNATDSAAAM QLFLMNPPPP QQPPPPASTA TTRSHHGSST LHMLLPNPSH HQGYTNNMSM 180 HQLPHQHHQQ LTWQSSSDHH HHNSQTEIGT VHVENSGEHG LSLSLSSSLE AAAKAEEYRN 240 IYYGSNASSH HQYNEFKTLL ADSSQHHQVS NQFRSSPAAA SSSSSSIGAI NILRNSTYTK 300 AAQELLEEFC SVGRGFSKKN KLRNSSNPKT SGGDGSSSGG GGSPSSAGAI KEHPPLSASD 360 RIEHQRRKVK LLTMLEEVDR RYNHYCEQMQ MVVNSFDIVM GHGAAIPYTA LAQKAMSRHF 420 RCLKDSVAAQ LRHSCELLGD KDAAGISSGL TKGETPRLRL LEQSLRQQRA FHQMGMMEQE 480 AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN WFINARVRLW 540 KPMVEEMYQQ ESKEREREEE EDEKLEKNEQ DQETKNSKTD KSTKSNNNES NFTAVRTTSQ 600 TPMTTAQSSA TAPDAAVVET GHRVRSSNIN AYENDPSSLL LPSASPYSNA AAVSSYGGST 660 AFSAVATCQQ GVGGFDDADM DADNIIRFGT NPTGDVSLTL GLRHAGNMPD KNASFCVRDF 720 GGF

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MGIAKTSPTT TILSKTLCNN PMSQDYNHHQ HQGGIFSFSN GFDRSDSPSL SQEKREHQRV  60
EMAEESSVAG SGIPVYETAG MLSEMFNFSR SSGGGGALDH SQSFRSNRQL LEQQHQNIPA  120
MNATDSAAAM QLFLMNPPPP QQPPPPASTA TTRSHHGSST LHMLLPNPSH HQGYTNNMSM  180
HQLPHQHHQQ LTWQSSSDHH HHNSQTEIGT VHVENSGEHG LSLSLSSSLE AAAKAEEYRN  240
IYYGSNASSH HQYNEFKTLL ADSSQHHQVS NQFRSSPAAA SSSSSSIGAI NILRNSTYTK  300
AAQELLEEFC SVGRGFSKKN KLRNSSNPKT SGGDGSSSGG GGSPSSAGAI KEHPPLSASD  360
RIEHQRRKVK LLTMLEEVDR RYNHYCEQMQ MVVNSFDIVM GHGAAIPYTA LAQKAMSRHF  420
RCLKDSVAAQ LRHSCELLGD KDAAGISSGL TKGETPRLRL LEQSLRQQRA FHQMGMMEQE  480
AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN WFINARVRLW  540
KPMVEEMYQQ ESKEREREEE EDEKLEKNEQ DQETKNSKTD KSTKSNNNES NFTAVRTTSQ  600
TPMTTAQSSA TAPDAAVVET GHRVRSSNIN AYENDPSSLL LPSASPYSNA AAVSSYGGST  660
AFSAVATCQQ GVGGFDDADM DADNIIRFGT NPTGDVSLTL GLRHAGNMPD KNASFCVRDF  720
GGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	488	546	5	63	Homeobox protein Meis2
3k2a_B	1e-16	488	546	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721148

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF173816	0.0	AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411954.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_024005715.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	V4MDV4	0.0	V4MDV4_EUTSA; Uncharacterized protein
STRING	XP_006411954.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	0.0	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]