PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721288
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 291aa    MW: 31787 Da    PI: 8.5015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721288genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001282101221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C+ Cgk+F ++  L  H+r
  676721288  82 PCTECGKTFWSWKALFGHMR 101
                5******************8 PP
2zf-C2H210.70.0017168190123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+F ++  L  H  +H
  676721288 168 FECGGCKKVFGSHQALGGHRASH 190
                89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.80681108IPR007087Zinc finger, C2H2
PfamPF139124.7E-881105IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-882103No hitNo description
Gene3DG3DSA:3.30.160.606.0E-483103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-8163190No hitNo description
PfamPF139121.2E-7167191IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66168195IPR007087Zinc finger, C2H2
SMARTSM003553168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
PfamPF139121.6E-12228253IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-5228254No hitNo description
SMARTSM003550.076229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTTNNSDSDP NFHNPLPPNS NAIIPIFPNP NLQLALSPSY DQSPRKKRTK TVTLSSSSLP  60
KSTPKPKYPK KPDPNAPKIT RPCTECGKTF WSWKALFGHM RCHPERQWRG INPPPNHRGP  120
IAALSSKQLN QGPPNLASLM TEEDHEVASY LLMLSEATPF SSSSVERFEC GGCKKVFGSH  180
QALGGHRASH KNVKGCFAIT NVTDDPVMVT TTCSDQDLQE KIATFSGHHK CNICLRVFSS  240
GQALGGHMRC HWEREGETMV GGALDLNVPA TTQDLSTSDV SGCSLDLRLG L
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721288
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490300.11e-170PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-151ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLV4MEC61e-168V4MEC6_EUTSA; Uncharacterized protein
STRINGXP_006412124.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-136C2H2-like zinc finger protein