PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721612

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 132aa MW: 15753.6 Da PI: 10.7407

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721612	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	48.6	2.2e-15	13	101	2	98
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F +++y++++d++++++isws +n+++f++ ++ee+ ++ + F + f F+ +L+ YgFk+vk ++ eF++k+F +g+ ell 676721612 13 FHERVYKLVDDPSTDSIISWSksNNSKTFIIRKPEELVRRKMLFKFYSDTFPEFISKLKFYGFKEVKGSR----------EFNNKNFVRGHPELLPA 99 8899***************6455599*****9999999999***************9887..........89******9999977 PP XX CS HSF_DNA-bind 97 ik 98 ++ 676721612 100 MH 101 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.8E-14	9	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.74E-17	10	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.6E-18	10	97	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.7E-7	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-14	13	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.7E-7	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MAYPDYIKGI MMFHERVYKL VDDPSTDSII SWSKSNNSKT FIIRKPEELV RRKMLFKFYS 60 DTFPEFISKL KFYGFKEVKG SREFNNKNFV RGHPELLPAM HIQAVIDRTR ARDKAELKLK 120 PKLKLKLKLK HK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721612

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415704.1	7e-37	PREDICTED: heat stress transcription factor A-4c-like
TrEMBL	A0A1J3D1L4	4e-41	A0A1J3D1L4_NOCCA; Heat stress transcription factor A-1e
STRING	XP_010415704.1	3e-36	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5067	14	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19630.1	8e-18	HSF family protein