PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721704
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 210aa    MW: 23457.3 Da    PI: 9.562
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721704genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.51.9e-352579660
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
               + cprC+s++tkfCyynnysl+qPry+Ck+CrryWt+GG+lr +PvGg +rknk+
  676721704 25 KYCPRCNSKHTKFCYYNNYSLTQPRYLCKTCRRYWTHGGSLRSIPVGGVSRKNKT 79
               57***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-211678IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.1212579IPR003851Zinc finger, Dof-type
PfamPF027015.6E-312679IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDTAQRPQLT KEMERRKRSE EALSKYCPRC NSKHTKFCYY NNYSLTQPRY LCKTCRRYWT  60
HGGSLRSIPV GGVSRKNKTF IKTSSTNKPF LPSPVTFEAK GDQVLASSQG ISSNSSSSST  120
FTACPNASSS SRLGLRYELI KPAFDFSLDN PLNQEGVSLA ATNTSDRLLL PFEILKPPYS  180
SPSSNSDKEE AADRSAGFWT EMFGGESWQL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533558.14e-43PREDICTED: dof zinc finger protein DOF1.8-like
STRINGXP_010533558.12e-42(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-30Dof family protein