PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676721874

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 251aa MW: 27427.7 Da PI: 6.389

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676721874	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.8	1.1e-08	83	129	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N +L k+l+ 676721874 83 KSKKRPLGNREAVRKYREKKKAKAASLEDEVIRLRAVNNQLMKRLQG 129 56678899**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-13	76	147	No hit	No description
SMART	SM00338	1.8E-9	79	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.714	81	128	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.2E-14	82	136	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.57E-7	84	128	No hit	No description
CDD	cd14686	2.42E-11	87	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDDGELEFSN TNMPEFPPNS CSMDSFFDEL LKDSCTHTHT CNPPGPENTH THTCLHVHTK 60 ILPASQSEEK ETTDDTSESS GKKSKKRPLG NREAVRKYRE KKKAKAASLE DEVIRLRAVN 120 NQLMKRLQGQ AALEAEVTRL KCLLVDIRGR IEGEIGSFPY QKPAVANAPF SYSMHPCNMP 180 CDVDNLYCLQ NGNSGEGTLM NEQGLNGCDF DQLQCLGNDN LAGCSNGSGT FIVDATGANK 240 RKGGARAAKA V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676721874

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005825	1e-125	AC005825.4 Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete sequence.
GenBank	AK117479	1e-125	AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13.
GenBank	BT029022	1e-125	BT029022.1 Arabidopsis thaliana At2g16770 mRNA, complete cds.
GenBank	CP002685	1e-125	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010467405.1	1e-155	PREDICTED: basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-147	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	D7L871	1e-151	D7L871_ARALL; DNA binding protein
STRING	XP_010467405.1	1e-154	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-125	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]