PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676722988
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 331aa    MW: 37331.7 Da    PI: 10.213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676722988genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.84.9e-29171269496
                E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                + tpsdv+k++rlv+pk++ae+h      +++ ++++ + +ed +g++W+++++y+++s++yv+tkGW++ vk+++L++ D+v+F+++  s+++l++ +
  676722988 171 TVTPSDVGKLNRLVIPKHHAEKHfplppqSLSVTKGVLINFEDVTGKVWRFRYSYWNSSQSYVMTKGWSRIVKDKNLQACDIVTFERSTGSDRQLYIDW 269
                679*********************99999777889***************************************************8866888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056784.5E-1187108IPR008889VQ
Gene3DG3DSA:2.40.330.101.4E-34166274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28167269IPR015300DNA-binding pseudobarrel domain
CDDcd100178.64E-26167267No hitNo description
PROSITE profilePS5086311.914168273IPR003340B3 DNA binding domain
SMARTSM010194.1E-20169273IPR003340B3 DNA binding domain
PfamPF023621.3E-26171269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNVLSEYTNQ QELHLSSKAF PDLYFSISLD ISYRTMIPTK CHEISGFRPS SLKFAKESHS  60
IKKATPCNVV KQPRRHGRAA PVIIYAHSPK VIHTRAENFM ALVQRLTGLE NVSRRNPNDV  120
SESSSSVLTE EASVGNDDGT SWEKHQQRQK LADIPLFTPS SMTLFAFIYQ TVTPSDVGKL  180
NRLVIPKHHA EKHFPLPPQS LSVTKGVLIN FEDVTGKVWR FRYSYWNSSQ SYVMTKGWSR  240
IVKDKNLQAC DIVTFERSTG SDRQLYIDWK IRSGPSKNPV QVVVRIFGVD IFNVTSTKPN  300
NVGATCGGKR SPDVDMFALR CVKKQAIINA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5616627412119DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676722988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716688.16e-97AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A398AA575e-95A0A398AA57_BRACM; Uncharacterized protein
STRINGBra038346.1-P3e-95(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-95related to ABI3/VP1 2