PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723008
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 240aa    MW: 27728.9 Da    PI: 5.6924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-1580122145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++ Ed++l++a+k++G++ W++Ia +++ g+ ++ +++rw+
        676723008  80 KKAWSEKEDQILIEAHKMYGNK-WTKIALRLP-GKGENTIRNRWN 122
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-1767131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-46883IPR009057Homeodomain-like
PROSITE profilePS5129422.39775129IPR017930Myb domain
SMARTSM007173.5E-1479127IPR001005SANT/Myb domain
PfamPF002492.1E-1480122IPR001005SANT/Myb domain
CDDcd001673.28E-1082125No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1684124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MWNSTIHNKG DNTNGYEPVL DNLVDEPLFD LSVSDGIKSA NTEINQVADQ KQNKKINSGK  60
WNDAEDIERW HNHLRPDIKK KAWSEKEDQI LIEAHKMYGN KWTKIALRLP GKGENTIRNR  120
WNATKRQMHS MKLKQSDENE NLPKNDNLKN YIRQVTIKNG PPKANETEET KSDDEDCENL  180
FDKEMSLSLD VTKKTTHPLA NISTASCYVP DPAATFSWDD YFTKVCESMD ETQKLMQGWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-186812447103B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479665.16e-77PREDICTED: transcription factor MYB98
TrEMBLA0A0D3C0866e-74A0A0D3C086_BRAOL; Uncharacterized protein
STRINGBo4g140330.11e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.15e-52myb domain protein 115