PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723274
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 141aa    MW: 15885.1 Da    PI: 9.2247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723274genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000436991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++Cgk    k + ++H +++
  676723274 69 FSCGKCGKALAVKGDWRTHEKNC 91
               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.35E-65489No hitNo description
Gene3DG3DSA:3.30.160.603.3E-45589IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MHMWGHGSEF RKGADSLKGT TQPAAILRLP CYCCAEGCKN NINHPRSKPL KDFRTLQTHY  60
KRKHGSKPFS CGKCGKALAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKSFGNGH  120
SPHPSLSFDG FEDDTECVTT E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723274
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0114381e-139AC011438.3 Genomic sequence for Arabidopsis thaliana BAC T23G18 from chromosome I, complete sequence.
GenBankAF2544481e-139AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188511e-139AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909181e-139AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
GenBankCP0026841e-139CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475619.11e-101PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-100ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D3C8H04e-99A0A0D3C8H0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EC834e-99A0A3P6EC83_BRAOL; Uncharacterized protein
STRINGXP_010475619.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-103WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]