PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676723606

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

YABBY

Protein Properties

Length: 231aa MW: 26002.9 Da PI: 10.5544

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676723606	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206	1.4e-63	66	207	22	170
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke....esastsvsseklsenedeevprvppvir 117 ++vsvP++slf++vtvrCGhCt+lls+n+ ++ ++ a ++++l+ ++++++s v+++ +s s+++ s++lsen d+e+pr+pp ir 676723606 66 IVVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSAPPP---------VHQDLQ-HKQHITSSVTRKecgsSSRSSNHFSTTLSENVDREAPRMPP-IR 154 79**************************9988766555.........333332.23333333333300003444444445679*******99.9 PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl 676723606 155 PPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 207 ***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.8E-60	65	207	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-7	152	200	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	155	201	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVPSHIVLRT LWAVVKVTSF SNMTVFSLQA SSTILHLFTI FYHIALRIVC QTYIKIGLTS 60 QSNYRIVVSV PYASLFTLVT VRCGHCTNLL SLNIGVSLHQ SAPPPVHQDL QHKQHITSSV 120 TRKECGSSSR SSNHFSTTLS ENVDREAPRM PPIRPPEKRQ RVPSAYNRFI KEEIQRIKAG 180 NPEISHREAF STAAKNWAHF PHIHFGLKLD GNKKGKQLDQ TVAGQKSNGY Y

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676723606

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638657.1	1e-113	PREDICTED: putative axial regulator YABBY 2
Refseq	XP_013710950.1	1e-113	putative axial regulator YABBY 2 isoform X1
Refseq	XP_013710951.1	1e-113	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-106	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A178WE92	1e-117	A0A178WE92_ARATH; YAB2
STRING	Bo5g009010.1	1e-113	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-101	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]