PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723654
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family YABBY
Protein Properties Length: 124aa    MW: 14062.8 Da    PI: 11.0823
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723654genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1372.3e-42210076170
      YABBY  76 kveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                k+++++++s v+++e+ s+s+s++ +    sen  +e+pr+pp+   PekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+i fgl
  676723654   2 KQHKQHVTSSVTRKECGSSSRSTNPFsttfSENVGREAPRMPPMRPAPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPQIRFGL 100
                78899999999999999999988877666699999********7777**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-383100IPR006780YABBY protein
SuperFamilySSF470958.12E-84594IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.5E-54995IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MKQHKQHVTS SVTRKECGSS SRSTNPFSTT FSENVGREAP RMPPMRPAPE KRQRVPSAYN  60
RFIKEEIQRI KAGNPEISHR EAFSTAAKNW AHFPQIRFGL KLDGNKKGKQ SDQTVAGQKS  120
NGYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-142AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710950.17e-75putative axial regulator YABBY 2 isoform X1
RefseqXP_013710951.17e-75putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-69YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1J3F0Q64e-75A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2
STRINGBo5g009010.13e-74(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-59YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]