PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676724210

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

FAR1

Protein Properties

Length: 809aa MW: 92799 Da PI: 6.892

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676724210	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	7.2e-21	56	130	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel 676724210 56 EFYNAYAGRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 130 6*************************************876..............589*************************98 PP
2	FAR1	67.5	3.4e-21	219	295	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +++it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnHel p 676724210 219 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 295 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-16	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-16	219	295	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-26	397	489	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	671	707	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	679	704	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-8	682	709	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MESAGTELNS FNNMVSKGYP LRVLNHNNGV NEDEQGNSGA ELYVGLEFDT AEEAREFYNA 60 YAGRTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD 120 QIQKEHNHEL GGEAHVEETT PRPARAPAPT KLAVTVNPHR PKMKVVDESD REQRSCPSSF 180 KRFKGGGGEG EVSDDHPKAV NGSEPFAGLE FGSANEACQF YQAYAEVVGF RVRIGQLFRS 240 KVDNSITSRR FVCSREGFQH PSRMGCGAYM RIKRQDSGGW IVDRLNKDHN HELEPGKKNE 300 DGLKKITDDV TGGLDSVDLI ELNDFGNNSN HIKKSTRENR IGKEWYPLLL DYFQSRQTED 360 MGFFYAVELD VHNGSCLSIF WADSRARFAC SQFGDSVVFD TSYRKGNYSV PFATFIGFNH 420 HRQPVLLGCA MVADESKESF LWLFQTWLRA MSGRRPRSIV ADQDLPIQQA LSQVFPQAHH 480 RYSAWQIREK ERENLRPFPS EFKYEYEKCI YQTQTVVEFD SVWNTLINKY GLRDDIWLRE 540 IYDHRENWVP AYLRASFFAG IPINGTIEPF FGASLDALTP LREFISRYEQ ALEQRREEER 600 KEDFNSYNLQ PFLQTKEPVE EQCRRLYTLT VFRIFQNELV QSYNYLCLKT YEEGAISRFL 660 VRKCGNESEK HAVTFSASNL NSSCSCQMFE HEGLLCRHIL KVFNLLEVRE LPSRYILHRW 720 TKNAEFGFVR DMESGVSSQD LKALMVFLLT LEEYEVLVRR CNVNPFDNFR RSASGGGGDG 780 VGVVVIVFPN DNHHCNGASG CKNVRTDQE

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MESAGTELNS FNNMVSKGYP LRVLNHNNGV NEDEQGNSGA ELYVGLEFDT AEEAREFYNA  60
YAGRTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD  120
QIQKEHNHEL GGEAHVEETT PRPARAPAPT KLAVTVNPHR PKMKVVDESD REQRSCPSSF  180
KRFKGGGGEG EVSDDHPKAV NGSEPFAGLE FGSANEACQF YQAYAEVVGF RVRIGQLFRS  240
KVDNSITSRR FVCSREGFQH PSRMGCGAYM RIKRQDSGGW IVDRLNKDHN HELEPGKKNE  300
DGLKKITDDV TGGLDSVDLI ELNDFGNNSN HIKKSTRENR IGKEWYPLLL DYFQSRQTED  360
MGFFYAVELD VHNGSCLSIF WADSRARFAC SQFGDSVVFD TSYRKGNYSV PFATFIGFNH  420
HRQPVLLGCA MVADESKESF LWLFQTWLRA MSGRRPRSIV ADQDLPIQQA LSQVFPQAHH  480
RYSAWQIREK ERENLRPFPS EFKYEYEKCI YQTQTVVEFD SVWNTLINKY GLRDDIWLRE  540
IYDHRENWVP AYLRASFFAG IPINGTIEPF FGASLDALTP LREFISRYEQ ALEQRREEER  600
KEDFNSYNLQ PFLQTKEPVE EQCRRLYTLT VFRIFQNELV QSYNYLCLKT YEEGAISRFL  660
VRKCGNESEK HAVTFSASNL NSSCSCQMFE HEGLLCRHIL KVFNLLEVRE LPSRYILHRW  720
TKNAEFGFVR DMESGVSSQD LKALMVFLLT LEEYEVLVRR CNVNPFDNFR RSASGGGGDG  780
VGVVVIVFPN DNHHCNGASG CKNVRTDQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676724210

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068655	0.0	AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876091.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_020876092.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	V4LPW9	0.0	V4LPW9_EUTSA; Uncharacterized protein
STRING	Bostr.26527s0315.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]