PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676724508

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 312aa MW: 36044.5 Da PI: 8.4119

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676724508	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.4e-49	25	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s +++ 676724508 25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIINQIDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsSKA 123 59*****************887774778888***********.5567789**********************************966667 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++glkktLv+y g+a kg+ktdW+mhe+rl 676724508 124 VIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-50	22	191	IPR003441	NAC domain
PROSITE profile	PS51005	50.474	24	191	IPR003441	NAC domain
Pfam	PF02365	2.0E-24	26	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDEIMGSWDK GRGEPEEEEE QVVKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIINQ 60 IDIYKFDPWD LPRSRNTEKE SYFFCKRGRK YRNSIRPNRV TGSGFWKATG IDKPVYSDGS 120 SKAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSTNLKVL NPTSSSLLHA 180 EVWTLCRIFK RNVSSRKYTP DWRELAGEKR VRPQQSKFQE AYISFGDNES SSSTNNINVM 240 ERKEKYERNV FQLHQTPHQQ YQPNIPMECI STTQVDNTVP HFSNDNIHDI TYENWDELRS 300 VVEFAFGPSS LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	26	197	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	26	197	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	26	197	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	26	197	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	26	197	22	174	NAC domain-containing protein 19
3swm_B	2e-43	26	197	22	174	NAC domain-containing protein 19
3swm_C	2e-43	26	197	22	174	NAC domain-containing protein 19
3swm_D	2e-43	26	197	22	174	NAC domain-containing protein 19
3swp_A	2e-43	26	197	22	174	NAC domain-containing protein 19
3swp_B	2e-43	26	197	22	174	NAC domain-containing protein 19
3swp_C	2e-43	26	197	22	174	NAC domain-containing protein 19
3swp_D	2e-43	26	197	22	174	NAC domain-containing protein 19
4dul_A	1e-43	26	197	19	171	NAC domain-containing protein 19
4dul_B	1e-43	26	197	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676724508

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026645	2e-99	AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBank	CP002686	2e-99	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013673189.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-73	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M4FE32	0.0	M4FE32_BRARP; Uncharacterized protein
STRING	Bra039353.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-161	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]