PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724592
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 250aa    MW: 25904.9 Da    PI: 10.0146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724592genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.7e-073861225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++G++C+F H
  676724592 38 KSKPCTKFFSTSGCPFGENCHFLH 61
               7789******************** PP
2zf-CCCH35.81.3e-11216241127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C +f++ G C +GdrC+FaHg+
  676724592 216 FKTKICERFSK-GSCTFGDRCHFAHGE 241
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-83861IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.78E-15103184IPR004088K Homology domain, type 1
SMARTSM003221.8E-11113183IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.3E-16113182IPR004088K Homology domain, type 1
PROSITE profilePS5008414.55114178IPR004088K Homology domain, type 1
CDDcd001052.47E-13116178No hitNo description
PfamPF000134.9E-12116180IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.109.4E-16210245IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7215241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8215245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624215242IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9216241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDARKRGRPE AGSYNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV SQLTNMGPPL PQVSRSMQGS GGGGGRFSGR GESGPGHVSS FGASATAKIS  120
VDASLAGAII GKGGVSSKQI CRQTGAKLSI QDHERDPNLK NIELEGTFEQ INEASAMVRE  180
LIGRLNSASR KPPGGGGGGL GGGLGSEGKP HPGSNFKTKI CERFSKGSCT FGDRCHFAHG  240
EAELRRSGIA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-160zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-153C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-159E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-159V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.11e-160(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-137C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]