PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724704
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 258aa    MW: 29594.7 Da    PI: 7.3775
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724704genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.71.1e-122347125
    G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
               kprlrWt eLHerFv+av++LGG++
  676724704 23 KPRLRWTAELHERFVDAVTHLGGPD 47
               79*********************98 PP
2G2-like50.44.9e-16711012555
    G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +AtPkti+++m vkgLtl+h+kSHLQk+Rl
  676724704  71 TEATPKTIMRVMAVKGLTLYHLKSHLQKFRL 101
                57****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2820102IPR009057Homeodomain-like
SuperFamilySSF466891.18E-1222102IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-82348IPR006447Myb domain, plants
TIGRFAMsTIGR015571.2E-972102IPR006447Myb domain, plants
PfamPF143793.1E-14147186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDIIS ICSVRLMSAI  60
NLTYNCDILS TEATPKTIMR VMAVKGLTLY HLKSHLQKFR LGKQPHKEHN HGHSVNIRDT  120
NRASMLDLQR NVVFTTPHII GHNMNEMQME VKRRIEEEVE VERQVNQRIE AQGKYMESML  180
EKACETQEAS LTKDYSTLFF DRTTICNNTS PLPIPWFEDH FPSSSSMDST LHLSDINPNF  240
SLQDSRSSIT KNRTVCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1423103258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00351DAPTransfer from AT3G12730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707640.0AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439160.0AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124669.11e-155PREDICTED: myb family transcription factor PHL12-like
RefseqXP_022544538.11e-155myb family transcription factor PHL12-like isoform X2
SwissprotQ8VYI21e-146PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A078I2Q11e-153A0A078I2Q1_BRANA; BnaA01g30340D protein
TrEMBLA0A398ASV31e-153A0A398ASV3_BRACM; Uncharacterized protein
TrEMBLM4FE191e-153M4FE19_BRARP; Uncharacterized protein
STRINGBra039340.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-124G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]