PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724760
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 189aa    MW: 22407.3 Da    PI: 3.887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724760genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.72.5e-11710735128
        NAM  35 kev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...........kgrapkgekt 119
                +ev  di++ +P+dLp   + +ek+wyf++++ +++ t   +n   ++++Wk+ g++++vl+   +++lvg+k+ +++              ++ ++ k 
  676724760   7 PEVchDIFSRHPRDLPG--YPREKHWYFYCRKLNSQVT---TN---SHSIWKQIGEETDVLDPknNDALVGIKRPFTLVdheeeesddilLSEEDEPPKY 98 
                444469**********4..35789*******9886643...33...3579***********98666677*****9999965655544444367777779* PP

        NAM 120 dWvmheyrl 128
                dW+m+e +l
  676724760  99 DWFMDEISL 107
                ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.0291124IPR003441NAC domain
SuperFamilySSF1019411.1E-1611124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKARNVPEVC HDIFSRHPRD LPGYPREKHW YFYCRKLNSQ VTTNSHSIWK QIGEETDVLD  60
PKNNDALVGI KRPFTLVDHE EEESDDILLS EEDEPPKYDW FMDEISLPWT VSDTDWVLCH  120
VFRKKITPEI FDVPMNKSES EEEEEEEEEE EEEEEEEEEE EEEEESVAES LDLLRENDED  180
VLPPSPSPP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635505.19e-80PREDICTED: NAC domain-containing protein 62
TrEMBLA0A0D3C0D72e-78A0A0D3C0D7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9B52e-78A0A3P6C9B5_BRAOL; Uncharacterized protein
STRINGBo4g140840.13e-79(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-61NAC family protein