PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676724798

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 216aa MW: 23733.3 Da PI: 9.7912

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676724798	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.1	3.4e-30	55	129	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 ++++++++h kv+gR+RRvR++ +caar+F+L++eLG+ +d++t++WLl a+p+i+ +tg + ++ ++ 676724798 55 QTKSTKDRHLKVEGRGRRVRIPPLCAARIFQLTRELGHRSDGETLQWLLHHAEPSIISATGRGIKPTDSVsqppP 129 6789**********************************************************5555522222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-24	58	127	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.113	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDPKNPPNQP NFLNPSPEKQ DNNNDRTSKE TEPKVEGKRK WKQKEKETKY GLEIQTKSTK 60 DRHLKVEGRG RRVRIPPLCA ARIFQLTREL GHRSDGETLQ WLLHHAEPSI ISATGRGIKP 120 TDSVSQPPPP RAVDLNVNGA SRSQLSNGFW PNEAGFGGGG GGANPSTTGG FDLNNGIGFL 180 GFDFNGSQMY QQMGQEQAKV LHLHGAQEEN ADKNGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676724798

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405404.1	1e-89	transcription factor TCP6
Swissprot	Q9FLM6	1e-61	TCP6_ARATH; Transcription factor TCP6
TrEMBL	V4LWE9	3e-88	V4LWE9_EUTSA; Uncharacterized protein
STRING	XP_006405404.1	5e-89	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	5e-54	TCP family protein

Publications ? help Back to Top
Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]