PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676724844

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 455aa MW: 51582.2 Da PI: 8.9373

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676724844	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	63.1	6.7e-20	323	371	2	50
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs 50 +fqr+wseeDei+ LqGl+d+k++tg++p++d++ fy+ vkksisf+v 676724844 323 YFQRVWSEEDEIAALQGLLDYKKDTGVNPYADTNTFYQSVKKSISFDVI 371 8**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-13	324	371	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MVQKSQMRQL RRFLPLTLLL KCVIQAMRRL VTHAKEEANI WPKDKSCYAH ITTKAVLCGK 60 RVFHHVEPEA TKSGEKMIDV VDEEWYSIDQ AVLAALQGSL SLSVLEAYSY CETAKDLWDT 120 LKNDFGNVSN LTRVFEVKRT INTHFQNGAA FNDFFGTEVW LQLHSLVLGL LAVCQDSVNV 180 HKRNHESVMV GDIIILLMTM VKIVAPVYCD SLDVEFLPYC LSNSDFRVVS SVSDCGWAVA 240 DVFGGALNRF HLLCNVKNLQ KKNPGSSTVK SVVAKKKQDS KKVKPLAKSA TKKRSFSETN 300 GAAVSTDAKR VKRSSGEETK KNYFQRVWSE EDEIAALQGL LDYKKDTGVN PYADTNTFYQ 360 SVKKSISFDV IVKSSGNSKK SPRFGVDDLS AQQGWSMLAS EDKRIFEEQW KVLQPKEFEF 420 YSQKSGFLHE VVTKMAEAFR PNPLDICRFF FCFWF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MVQKSQMRQL RRFLPLTLLL KCVIQAMRRL VTHAKEEANI WPKDKSCYAH ITTKAVLCGK  60
RVFHHVEPEA TKSGEKMIDV VDEEWYSIDQ AVLAALQGSL SLSVLEAYSY CETAKDLWDT  120
LKNDFGNVSN LTRVFEVKRT INTHFQNGAA FNDFFGTEVW LQLHSLVLGL LAVCQDSVNV  180
HKRNHESVMV GDIIILLMTM VKIVAPVYCD SLDVEFLPYC LSNSDFRVVS SVSDCGWAVA  240
DVFGGALNRF HLLCNVKNLQ KKNPGSSTVK SVVAKKKQDS KKVKPLAKSA TKKRSFSETN  300
GAAVSTDAKR VKRSSGEETK KNYFQRVWSE EDEIAALQGL LDYKKDTGVN PYADTNTFYQ  360
SVKKSISFDV IVKSSGNSKK SPRFGVDDLS AQQGWSMLAS EDKRIFEEQW KVLQPKEFEF  420
YSQKSGFLHE VVTKMAEAFR PNPLDICRFF FCFWF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676724844

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-20	DNA-binding storekeeper protein-related transcriptional regulator