PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724994
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 289aa    MW: 31854.1 Da    PI: 8.268
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724994genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222e-3849107563
     zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                 +kcprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  676724994  49 PQKCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 107
                689****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-234899IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3249104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0550104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDPQQEISNE TLETILVSST KANNYNNNNK KMEEEMKKKQ VRGELGGEPQ KCPRCESPNT  60
KFCYYNNYSL SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR RNKRSSSSSS FSKNNNKPFN  120
FHNDPLHNPL ITGMPSSFGY DSIDLNLAFA TLQKHSSSQA TPSFGFGGDL SIYGNSTNAH  180
SDVFGNGGVF GGHNGNLNNG TLCYGFMPGN ENESKSSSLG ISLVENERKQ ENVNNNNNIS  240
ENTSKVLWGF PWQMTGDSAG VVPEIDPGRE SWNALASSWN NGLLNTPLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409879.11e-159dof zinc finger protein DOF2.1
SwissprotQ8LE431e-135DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLV4M8D61e-158V4M8D6_EUTSA; Uncharacterized protein
STRINGXP_006409879.11e-159(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-114Dof family protein