PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725512
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 183aa    MW: 20161 Da    PI: 9.3703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725512genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014101123123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg  F+    L  H+r+H
  676725512 101 HTCPICGLEFPLGQALGGHMRKH 123
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.71E-748123No hitNo description
PfamPF139128.8E-124974IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3695072IPR007087Zinc finger, C2H2
SMARTSM003550.545072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18101128IPR007087Zinc finger, C2H2
PfamPF139123.1E-9101125IPR007087Zinc finger, C2H2
SMARTSM003550.045101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVARSDYIDR TVEVTSTKSE NLNRTVEDTA TCLMLLSRVG ECVRGESRVY RCKTCMKEFS  60
SFQALGGHRA SHRKPVNNSS DEQSSLSSGS VTKKSKKASS HTCPICGLEF PLGQALGGHM  120
RKHRSDKENG ALVTRSFLPE ELTTTITTLK KSSSGKRVGC FDLVSDSMES MINLKLELGR  180
TIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725512
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591437.14e-87PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX853e-71ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A0D3A8Q39e-86A0A0D3A8Q3_BRAOL; Uncharacterized protein
STRINGBo1g067420.11e-86(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-58C2H2 family protein