PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725526
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 172aa    MW: 19045.9 Da    PI: 10.3382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725526genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000323658123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C+k Fs+  +L  H  +H
  676725526 36 YRCKTCTKEFSSFQSLGGHRASH 58
               9*************999999888 PP
2zf-C2H214.97.9e-0588110123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg  F+    L  H+r+H
  676725526  88 HRCPICGLEFPMGQALGGHMRKH 110
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-934110No hitNo description
PfamPF139121.7E-103560IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7233663IPR007087Zinc finger, C2H2
SMARTSM003550.183658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-486113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.20188115IPR007087Zinc finger, C2H2
PfamPF139123.5E-1188111IPR007087Zinc finger, C2H2
SMARTSM003550.02588110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVARREKLDR TVDDRAVKCL MLLSKVGGYG GESRVYRCKT CTKEFSSFQS LGGHRASHNK  60
PVNNSIDEQL SLSSGPVTKK KTKKTRPHRC PICGLEFPMG QALGGHMRKH RNEEDSSGAL  120
VTRSFFPEAT TTTTFTTLKK SSSGKRVACL DLGLDSMDSM INLKLELGRT IY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725526
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651513.18e-81zinc finger protein ZAT8
SwissprotQ9LX857e-73ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3N6PW191e-79A0A3N6PW19_BRACR; Uncharacterized protein
STRINGBo3g130310.17e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-67C2H2 family protein