PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 205aa    MW: 22599.6 Da    PI: 9.9356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016117139123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg  F+    L  H+r+H
  676725528 117 HRCPICGLEFPLGQALGGHMRKH 139
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-75579No hitNo description
PfamPF139125.5E-95679IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1625784IPR007087Zinc finger, C2H2
SMARTSM003552.55779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-7112139No hitNo description
SMARTSM003550.032117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951117144IPR007087Zinc finger, C2H2
PfamPF139121.4E-9117140IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVARRENFDR RVEEDTTKIS HENLERTVED RAANCLMLLS KVGERSEGRD VVESRVFRCK  60
TCMQEFSSFQ ALGGHRASHN ATTTNIKKPS SSGEEQSSSI SSGHVIAKKK TKKTRPHRCP  120
ICGLEFPLGQ ALGGHMRKHR NEENAGGGAL VTRSFFPEAA AATTTMFTTL KKSSSGKRVA  180
CFDLGSSDSM ESTINLKLEL GRTIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725528
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651513.12e-80zinc finger protein ZAT8
RefseqXP_013668378.13e-80zinc finger protein ZAT8-like
SwissprotQ9LX854e-62ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3N6PW191e-78A0A3N6PW19_BRACR; Uncharacterized protein
TrEMBLM4DNY77e-79M4DNY7_BRARP; Uncharacterized protein
STRINGBra018225.1-P1e-79(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-59C2H2 family protein