PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725582
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 411aa    MW: 45530.4 Da    PI: 8.4473
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725582genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.6e-114570126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C+f++rtG C yG++C+++H+
  676725582 45 PGERDCQFYLRTGLCGYGSTCRYNHP 70
               5789*********************9 PP
2zf-CCCH36.58e-1290114327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tG CkyG++Ck++H++
  676725582  90 QPDCEYFLKTGACKYGSTCKYHHPK 114
                789********************96 PP
3zf-CCCH38.51.9e-12134159227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C++++rtGtC++G  CkF+H++
  676725582 134 GEKPCPYYLRTGTCRFGVACKFHHPQ 159
                689*********************97 PP
4zf-CCCH29.31.5e-09264284525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 Crff+ tGtCkyG+ Ck+ H
  676725582 264 QCRFFMNTGTCKYGNDCKYTH 284
                5******************88 PP
5zf-CCCH31.14.1e-10307332126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C  f ++G+Ck+G++CkF H+
  676725582 307 PGQPACGSFKAYGFCKFGPSCKFDHS 332
                57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0044472IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-45069IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89687115IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-493113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7131161IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939132160IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6136159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263259287IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034260286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6260284IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7264284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5265284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5302332IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103306334IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7308332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSDTQHVQSS IKSIRSSEKI EDAFRKMKVS NENGVAQSNT YPDRPGERDC QFYLRTGLCG  60
YGSTCRYNHP TNLPQGIMYY NEELPERIGQ PDCEYFLKTG ACKYGSTCKY HHPKDRNGAE  120
PVLFNVLSLP MRQGEKPCPY YLRTGTCRFG VACKFHHPQP DNGNSTAAYG MSSFPSPGLH  180
YAGGLTMMST YETLPRPQLP QSYVPVMVSP SQGLMPPQSW ATYMSASNSM YGVKNQAYYS  240
GSSAPMPMTV TLSGGLPERS EQQQCRFFMN TGTCKYGNDC KYTHLGVRIS PPPPPNLINP  300
FVLPARPGQP ACGSFKAYGF CKFGPSCKFD HSVLPYPNLT MASPLPSPYA SPVSSNYQRI  360
SPSPSRSGRK AMPNDKPDVK KEMSETEKPE DDTEQLKNSQ VQDLSENLSS A
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009087.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGAl_scaffold_0001_4290.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]