PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725640
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 168aa    MW: 19461.2 Da    PI: 10.5929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725640genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122143223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C+ C++ F ++ +L++H +t H
  676725640 21 ECSVCNRIFLTPQDLVSHSNTfH 43
               6*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002802243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNGGFGMKKN LKRVSHPQPQ ECSVCNRIFL TPQDLVSHSN TFHPRFPTFS SSATAPPTTF  60
RPYQNLNRNP YPVLPARNRF DVNYYRSGYI DEQGRFHKGF PATTPANRSN FLYRQQEMPK  120
LMNFFPAMSS ENFRTLPLLC QLEQRRPQEA FTEKGRAISS PIDLTLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418127.18e-63uncharacterized protein LOC18994422
TrEMBLA0A0D3DIU11e-65A0A0D3DIU1_BRAOL; Uncharacterized protein
STRINGBo8g002980.12e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.15e-43C2H2-like zinc finger protein