PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725736
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CO-like
Protein Properties Length: 420aa    MW: 46023.8 Da    PI: 5.7781
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725736genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-07445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +C+ ++ +++  +C++++  lC +C ++ H+       Ht++
  676725736  4 RCDYCGTEQALVYCTSDSAKLCLNCDVYVHSAnplslrHTRS 45
               8******99*********************668888888875 PP
2CCT25.26e-10278302125
        CCT   1 ReaallRYkeKrktRkFeKkirYes 25 
                R+ a++RYk+K+++R F K+irY+s
  676725736 278 RDDAKNRYKQKKSKRMFGKQIRYAS 302
                8899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.442147IPR000315B-box-type zinc finger
CDDcd000213.64E-6447No hitNo description
PfamPF006431.5E-6445IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDARCDYCGT EQALVYCTSD SAKLCLNCDV YVHSANPLSL RHTRSLLCEK CFSQPALFHC  60
LSEKVSLCQA CHWTGSTCSG FGHRIQKLNP YSGCPSPADY AKIWYSILEP SVSKSGPPFD  120
DCTKMKEFED CDGLSTSAVT QTQNPNDYSS FFSVEPTLPN VIDKGCSDLD ICEGINLDDL  180
PLNFNASDDI IGCSTLDHTK CYQYSEEAVE GEKNISLRFL MLPASSGNVV PSLSQSMSNI  240
TGEKSATDYQ DCGISAGFLI GESPWESNIE VRFSPKSRDD AKNRYKQKKS KRMFGKQIRY  300
ASHLCYIPSK DIVSCESSNK IDLQDQASKT LKGANDHAPE MSPSKKICRV DQPIAFPTQK  360
SSVCFTIHGC IFAAELTAHR SSGSLCEESP ASSDVASSLF FLNSSAHASY SPSLSLVFKI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004815.11e-160putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233791e-144COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLV4MRZ41e-157V4MRZ4_EUTSA; Uncharacterized protein
STRINGXP_006414550.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.11e-146B-box type zinc finger protein with CCT domain